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Complete Publication List |
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1. Shivani Malik, Shruti Bagla, Priyasri Chaurasia, Zhen Duan and Sukesh R. Bhaumik (2007) Elongating RNA polymerase II is disassembled through specific degradation of its largest but not other subunits in response to DNA damage in vivo. Journal of Biological Chemistry, 283: 6897-905. 2. Jung-Shin Lee, Abhijit Shukla, Jessica Schneider, Laurence Florens, Selene K. Swanson, Michael P. Washburn, Sukesh R. Bhaumik and Ali Shilatifard (2007) Translating histone crosstalk between H2B monoubiquitination and H3 methylation by COMPASS and Dot1. Cell, 131: 1084-1096. 3. Sukesh R. Bhaumik, Edwin Smith and Ali Shilatifard (2007) Covalent modifications of histones during development and diseases pathogenesis. Nature Structural and Molecular Biology, 14: 10081016. 4. Abhijit Shukla and Sukesh R. Bhaumik (2007) H2B-K123 ubiquitination stimulates RNAPII elongation independent of H3-K4 methylation. Biochemical and Biophysical Research Communications 359: 214-220. 5. A. Wood, A. Shukla, J. Schneider, J. Lee, J. D. Stanton, T. Dzuiba, S. K. Swanson, L. Florens, M. P. Washburn, J. Wyrick, Sukesh R. Bhaumik and Ali Shilatifard (2007) Ctk complex regulation of histone methylation by COMPASS. Molecular and Cellular Biology 27: 709-720. 6. J. Schneider, P. Bajwa, F. C. Johnson, Sukesh R. Bhaumik and Ali Shilatifard (2006) Rtt109 is required for proper H3K56 acetylation: A chromatin mark associated with the elongating RNA polymerase II. Journal of Biological Chemistry 281: 37270-37274. 7. Abhijit Shukla, Pratibha Bajwa and Sukesh R. Bhaumik (2006) SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo. Nucleic Acids Research 34: 6225-6232. 8. Sukesh R. Bhaumik (2006) Analysis of in vivo targets of transcriptional activators by fluorescence resonance energy transfer. Methods 40: 353-350. 9. Abhijit Shukla, Nadia Stanojevic, Zhen Duan, Thomas Shadle and Sukesh R. Bhaumik (2006) Functional analysis of H2B-K123 ubiquitination in regulation of H3-K4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo. Journal of Biological Chemistry 281:19045-19054. 10. Abhijit Shukla, Nadia Stanojevic, Zhen Duan, Payel Sen and Sukesh R. Bhaumik (2006) Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo. Molecular and Cellular Biology 26:3339-3352. 11. Sukesh R. Bhaumik+, Tamal Raha+, David P. Aiello and Michael R. Green (2004) In Vivo Target of a Transcriptional Activator Revealed by Fluorescence Resonance Energy Transfer. Genes and Development 18: 333-343 (+These authors contributed equally). 12. Sukesh R. Bhaumik+, Wu-Cheng Shen+, Helen C. Causton, Itamar Simon, Xiaochung Zhu, Ezra G. Jennings, Tzang-Shing Wang, Richard A. Young and Michael R. Green (2003). Comprehensive analysis of essential yeast TAFs in genome-wide transcription and pre-initiation complex assembly. EMBO Journal 22: 3395-3402 (+These authors contributed equally). 13. Sukesh R. Bhaumik and Michael R. Green (2003). Interaction of Gal4p with components of the transcription machinery in vivo. Methods in Enzymology 370: 445-454. 14. Sukesh R. Bhaumik and Michael R. Green (2002). Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo. Molecular and Cellular Biology 22: 7365-7371. 15. Sukesh R. Bhaumik and Kandala V. R. Chary (2002). Molecular dynamics and mechanics calculations on a DNA duplex with A+-C, G-T and T-C mispairs. Journal of Biomolecular Structure and Dynamics 20: 199-206. 16. Xiao-Yong Li, Sukesh R. Bhaumik, Xiaocun Zhu, Lei Li, Wu-Cheng Shen, Bharat L. Dixit and Michael R. Green (2002). Selective recruitment of TAFs by upstream activating sequences: Implications for eukaryotic promoter structure. Current Biology 12: 1240-1244. 17. Parvathy V. R., Sukesh R. Bhaumik, Kandala V.R. Chary, Girjesh Govil, Keliang Liu, Frank B. Howard and H. Todd Miles (2002). NMR structure of a parallel-stranded DNA duplex at atomic resolution. Nucleic Acids Research 30: 1500-1511. 18. Sukesh R. Bhaumik and Michael R. Green (2001). SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes and Development 15: 1935-1945. 19. Sukesh R. Bhaumik+, Xiao-Yong Li+, and Michael R. Green (2000). Distinct Classes of Yeast Promoters Revealed by Differential TAF Recruitment. Science 288: 1242-1244 (+These authors contributed equally). 20. Sukesh R. Bhaumik and H. M. Sonawat (1999). Glucose Dehydrogenase from Halobacterium salinarum: Fluorescence Quenching and Binding to NADPH. Physiological Chemistry Physics & Medical NMR 31: 85-92. 21. Sukesh R. Bhaumik and H. M. Sonawat (1999). Kinetic mechanism of glucose dehydrogenase from Halobacterium salinarum. Indian Journal of Biochemistry and Biophysics 36: 143-149. 22. Sukesh R. Bhaumik, K. V. R. Chary and G. Govil (1998). Molecular mechanics calculations on a triple stranded DNA involving C+.G-T and T.A+ -C mismatched base triples. Journal of Biomolecular Structure and Dynamics 16: 527-534 23. Sukesh R. Bhaumik and K. V. R. Chary (1998). A+-C mismatched base pairing in DNA. Current Science (India) 74: 1008-1012. 24. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1998). A novel palindromic triple-stranded structure formed by homopyrimidine dodecamer d-CTTCTCCTCTTC and homopurine hexane d-GAAGAG. Nucleic Acids Research 26: 2981-2988. 25. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1997). Homopurine and Homopyrimidine strands complementary in parallel orientation form an antiparallel duplex at neutral pH with A-C, G-T and T-C mismatched base pairs. Biopolymers 41: 773-784. 26. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1996). NMR characterization of a triple stranded complex formed by homo-purine and homopyrimidine DNA strands at 1:1 molar ratio and acidic pH. Progress in Biophysics and Molecular Biology 65: PB 124. 27. Sukesh R. Bhaumik, Anil Saran and G. Govil (1996). PCILO investigations on the conformation of two-base hairpin loop in DNA. Chemical Physics 204: 205-211. 28. K. V. R. Chary, Sukesh R. Bhaumik, G. Govil, K. Liu and H. T. Miles (1996). DNA strands complementary in parallel orientation, form an antiparallel duplex at neutral pH with A-C, G-T and T-C mismatched base pairs. Progress in Biophysics and Molecular Biology 65: PB 123 29. Sukesh R. Bhaumik (1996). Conformational feasibility of a DNA hairpin with one-base loop. Biochemical and Biophysical Research Communications 220: 853-857. 30. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1995). NMR characterization of a triple stranded complex formed by homo-purine and homopyrimidine DNA strands at 1:1 molar ratio and acidic pH. Nucleic Acids Research 23: 4116-4121. 31. Sukesh R. Bhaumik and H. M. Sonawat (1994). Pyruvate metabolism in Halobacterium salinarium studied by intracellular 13C nuclear magnetic resonance spectroscopy. Journal of Bacteriology 176: 2172-2176. |
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