ADRFA Listing of Faculty Publications

Biochemistry & Molecular Biology Research Page Links
Blaine Bartholomew, Ph.D.
 
Ramesh Gupta, Ph.D.
 
Peter Hardiwicke, Ph.D.
 
Piroska Huvos, Ph.D.
 
John Shriver, Ph.D.
 
Jianjun Wang, Ph.D.
 
ADRFA Faculty Publications Department Listing
 
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Biochemistry & Molecular Biology
Research Publications
1997-2000

Blaine Bartholomew, Ph.D.

  • Journal Articles
    1. Zofall, M. and Bartholomew, B. Nucleic Acids Res. (in press). Two Novel dATP Analogues for DNA Photoaffinity Labeling.
    2. Sengupta, S.M., Persinger, J., Bartholomew, B. and Peterson, C.L. (1999) Methods 19, 434-446 . Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/SNF.
    3. Persinger, J. and Bartholomew, B. (in press) edited by T. Moss in "Methods in Molecular Biology: Protein-DNA Interaction Protocols". Site-specific DNA photoaffinity labeling of RNA polymerase III transcription complexes.
    4. Persinger, J., Sengupta, S.M., and Bartholomew, B. (1999) Mol. Cell. Biol. 19, 5218-5234, Spatial Organization of the Core Region of Yeast TFIIIB-DNA Complexes.
    5. Michelson, R.J., Collard, M.W., Ziemba, A.J., Persinger, J., Bartholomew, B., and Huggenvik, J.I. (1999) J. Biol. Chem. 274, 30510-30519. Nuclear DEAF-1 related (NUDR) Protein Contains a Novel DNA Binding Domain and Represses Transcription of the Heterogeneous Nuclear Ribonucleoprotein A2/B1 Promoter."
    6. Tate, J.J., Persinger, J., and Bartholomew, B. (1998) Nucleic Acids Res., 26, 1421-1426. Survey of four different photoreactive moieties for DNA photoaffinity labeling of yeast RNA polymerase III transcription complexes.
    7. Radebaugh, C.A., Gong, X., Bartholomew, B. and Paule, M.R. (1997) J. Biol. Chem., 272, 3141-3144. Identification of Previously Unrecognized Common Elements in Eukaryotic Promoters: a Ribosomal RNA Initiator Element for RNA Polymerase I.

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Ramesh Gupta, Ph.D.

  • Journal Articles
    1. Gomes, I. and R. Gupta. 1997. RNA splicing ligase activity in the archaeon Haloferax volcanii. Biochem. Biophys. Res. Commun. 237:588-594.
    2. Zofallova, L., Y. Guo and R. Gupta. 2000. Junction phosphate is derived from the precursor in the tRNA spliced by the archaeon Haloferax volcanii cell extract. RNA 6:1019-1030.

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Peter Hardiwicke, Ph.D.

  • Journal Articles
    1. Shi, X., Chen, M., Huvos, P. E. and Hardwicke, P. M. D. (1998) 'Amino Acid Sequence of a Ca2+-transporting ATPase from the Sarcoplasmic Reticulum of the Cross-striated Part of the Adductor Muscle of the Deep Sea Scallop' Comp. Biochem. Physiol., Part B, 120, 359-374
    2. Hardwicke, P. M. D., Ryan, C. and Kalabokis, V. N. (1999) 'A Novel Small Protein Associated with a Conjugated Trienoic Chromophore from Membranes of Scallop Adductor Muscle' Biochim. Biophys. Acta, 1417, 1-8
    3. Chen, M., Zhang, Z., Tawiah-Boateng, M. -A. and Hardwicke, P. M. D. (2000) 'A Ca2+-dependent Tryptic Cleavage Site and a Protein Kinase A Phosphorylation Site Are Present in the Ca2+-Regulatory Domain of Scallop Muscle Na+-Ca2+ Exchanger' J. Biol. Chem., 275, 22961-22968.

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Piroska Huvos, Ph.D.

  • Journal Articles
    1. Huvos, P., Wu, M., Gorovsky, M.A. (1998) A developmentally eliminated sequence in the flanking region of the histone H1 gene in Tetrahymena thermophila contains short repeats. J. Eucaryotic Microbiology 45 189-197
    2. Shi, X., Chen, M., Huvos, P. E. and Hardwicke, P. M. D. (1998) Amino Acid Sequence of a Ca2+-transporting ATPase from the Sarcoplamsic Reticulum of the Cross-striated part of the Adductor Muscle of the Deep Sea Scallop. Comparision to SERCA Enzymes of Other Animals. Comparative Biochemistry and Physiology Part B 120 359-374.

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John Shriver, Ph.D.

  • Journal Articles
    1. Hydrophobic Core Packing and the Stability of a Hyperthermophile Protein. Andrew Clark, Bradford McCrary, Stephen Edmondson, and John W. Shriver (submitted) Biochemistry.
    2. Intercalation and the Energetics of Sac7d DNA Binding and Bending. William Peters, Stephen Edmondson, and John W. Shriver. (submitted) Nature Structural Biology.
    3. The A-State of Sac7d is the Native State. Jennifer L. Bedell, Bradford S. McCrary, Stephen P. Edmondson, and John W. Shriver (accepted) Protein Science.
    4. Crystal Structures of the Chromosomal Proteins Sso7d/Sac7d Bound to DNA Containing T-G Mismatched Base Pairs. Shaoyu Su, Yi-Gui Gao, Howard Robinson, Yen-Chywan Liaw, John W. Shriver, and Andrew H.-J. Wang (accepted) Journal of Molecular Biology.
    5. Calorimetry of Thermophile Proteins. John W. Shriver, William Peters, Nicholas Szary, Andrew Clark, and Stephen Edmondson (in press) Methods in Enzymology.
    6. DNA-Binding Proteins Sac7d and Sso7d from Sulfolobus. Stephen P. Edmondson and John W. Shriver (in press) Methods in Enzymology.
    7. Mutational Analysis of Differences in Thermostability between Histones from Mesophilic and Hyperthermophilic Archaea. Wen-tyng Li, John W. Shriver, and John N. Reeve (2000) J. Bacteriology 182, 812-817.
    8. The Solution Structure of the Sac7d/DNA Complex: A Small-Angle X-ray Scattering Study. Joanna Krueger, Bradford S. McCrary, Andrew H.-J. Wang, John Shriver, Jill Trewhella, and Stephen Edmondson (1999) Biochemistry 38, 10247-10255.
    9. The Crystal Structure of the Hyperthermophile Chromosomal Protein Sso7d Bound to DNA. Yi-Gui Gao, Shao-Yu Su, Howard Robinson, Savita Padmanabhan, Louis Lim, Bradford S. McCrary, Stephen Edmondson, John Shriver, and Andrew H.-J. Wang (1998) Nature Structural Biology 5, 782-786.
    10. The Hyperthermophile Chromosomal Protein Sac7d Sharply Kinks DNA. Howard Robinson, Yi-Gui Gao, Bradford S. McCrary, Stephen P. Edmondson, John W. Shriver, and Andrew H.-J. Wang (1998) Nature 392, 202-205.
    11. Thermodynamic Stability of Archaeal Histones. Wen-tyng Li, Rowan Grayling, Kathleen Sandman, Steve Edmondson, John Shriver, and John Reeve (1998) Biochemistry 37, 10563-10572.
    12. Linkage of Protonation and Anion Binding to the Folding of Sac7d. Bradford S. McCrary, Jennifer Bedell, Stephen Edmondson, and John W. Shriver (1998) Journal of Molecular Biology 276, 203-224.

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Jianjun Wang, Ph.D.

  • Journal Articles
    1. Fan, D., Ren X. F., Reese, L. R., Weers, P. M. M., Ryan, R. O. and Wang, J. (2000). A complete assignment of an exchangeable apolipoprotein - L. migratoria apolipophorin-III. submitted to J. Biomol-NMR.
    2. Wang, J., Sykes, B.D. and Ryan, R.O. (2000). Structural basis of exchangeable apolipoprotein-lipoprotein interaction. submitted to Structure.
    3. Narayanswami, V., Wang, J., Schieve D., Kay, C.M. and Ryan, R. O. (1999). A molecular trigger of lipid binding-induced opening of a helix bundle exchangeable apolipoprotein. Proc. Natl. Acad. Sci. U.S.A. 96, 4366-4371 .
    4. Wang, J., Sykes, B.D. and Ryan, R.O. (1998). NMR Evidence for a Lipid Binding-Induced Conformational Adaptation of Apolipophorin III. Biochem. Cell Biol. 76, 276-283.
    5. McInnes, C., Wang, J., O'Conner McCourt, M. and Sykes, B.D. (1998). Structural based minimization of transforming growth factor-alpha: solution structure and activity of a truncated TGFa. J. Biol. Chem. 273 27357-27363.
    6. Weers, P. M. M., Wang, J., Sykes, B. D. and Ryan, R. O. (1998). Bacterial overexpression, isotope enrichment and NMR studies of Locusta migratoria apolipophorin-III and its interaction with lipids. Biochim. Biophys. Acta. 1393, 99-107.
    7. Wang, J., Narayanswami, V., Sykes, B. D. and Ryan, R. O.(1998) Interhelical contacts are essential for M. sexta apolipophorin-III proper folding and its interaction with lipoproteins. Protein Science 7, 336-341.

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This page was updated October 23, 2000